Biology Forum Molecular Biology chromophores

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    • #6955
      sarahjay8
      Participant

      I’m not sure if I put this topic in the right place so if not, Sorry!

      Does anybody know if the following qualify as chromophores? I can not find any information relating to individual atoms in a molecule. Some assistance would be muchly appreciated:

      The nitrogen of amines? (n to σ* transitions)
      the oxygen of alohols? (n to σ* transitions)
      Aromatic compounds? ( π __> π*) <—thats a pie sign
      All organic compounds (σ—->σ* transitions)

      thanks in advance!

    • #68953
      dipjyoti
      Participant

      Chromophores are atomic configurations which can alter the energy in delocalised systems. They are composed of atoms joined in a sequence composed of alternating single and double bonds. Double bonds in organic compounds can be of two types. If the atoms with double bonds are not adjacent, they are termed isolated double bonds, and exist independently of other double bonds in the same molecule. If adjacent atoms have double bonds they are termed conjugated double bonds and the bonds interact with each other. Chromophore configurations often exist as multiple units, having conjugated double bonds, and are more effective when they do so. This is due to the interaction between the double bonds, which causes partial delocalisation of the electrons involved in the bonds. In this case, although specific atoms are involved in the bonds, the electrons are distributed over a larger area than the specific atoms and also involve adjacent atoms that have double bonds.

      Thank You

      Dip Jyoti Chakraborty


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    • #68954
      dipjyoti
      Participant

      The nitrogen of amines. (n to σ* transitions)

      COMPLEFXO RMATIBOETNW EEN AMINESA ND HALOMETHANES
      from 1 to 4 X loTa dynes and thus not significant. experiments made on the same sample indicates that little
      cision in bound water determination varied from 1 to 5% modified form was produced by drying and rehydradepending
      on the amount of water bound. tion.
      Acknowledgments.-This work was supported by
      the Office of Naval Research through contract NOTE ADDED IN PRooF.-Using the auto-oxidation and
      carbon-monoxide-binding tests the OCy preparations were 710(15) NR 304-306 with the University Of
      found to contain 95% native form. The oxidation-reduc- Minnesota and by the United States Public
      Pre-
      The field factor
      , was 5.41 X 106 gauss’lcm.
      tion titration behavib; was that to be expected for a oneelectron
      process and the standard half-cell potential had
      the accepted value. Although no tests for the presence of
      “modified” form after the hydratioll experiments were
      made, the complete reproducibility of the susceptibility
      Health Service. We appreciate this assistance. we wish to express our gratitude to professors
      Doyle Britton and 2.2. Hugus for helpful consultations.
      [CONTRIBUTION FROM THE SHELL DEVELOPMFCCONMTP ANY, EMERYVILLCEA,L IFORNIA]
      Solvent Effects on n -+ Q* Transitions; Complex Formation Between Amines and
      Halomethanes
      BY D. P. STEVENSOANND G. hl. COPPINCER
      RECEIVEDJU NE 30, 1961
      By means of measurements of the ultraviolet absorption spectra of isoactane solutions of triethylamine with added, (1)
      chloroform, (2) fluorotrichloromethane, (3) carbon tetrachloride and (4) bromotrichloromethane, it is shown that amines (B)
      form complexes with halomethanes, (A), that are either 1: 1 charge transfer complexes or interact (in 1: 1 pairs) to give
      rise to so-called contact charge-transfer spectra. The complex formation (or contact interaction) accounts for the photochemical
      instability of solutions of aliphatic amines in carbon tetrachloride solution. The photo reactivities of the amines
      in the three tetrahalomethanes in the ultraviolet increase in the order; FCCL < CICClr < BrCCb.
      In connection with our survey of the use of solvent
      effects on the spectral location of n + o*
      transitions as means of studying specific solvation
      of the hydrogen bonding type, it seemed to be of
      interest to compare by this technique the hydrogen
      bonding power of chloroform toward amines with
      that of the previously studied water’ and simple
      alcohol1b solvent systems. To this end we undertook
      the comparison of the ultraviolet absorption
      spectrum of triethylamine in chloroform solution
      with that of this base in water, isooctane and diethyl
      ether. In line with out previous experience, we
      expected to find a blue shift of the chloroform solution
      spectrum of the ethylamine relative to that of
      the ether or isooctane spectrum only slightly less
      than the blue shift that is found in tertiary butyl
      alcohol solution.lb As may be seen in Fig. 1,
      curves VI and V, respectively, the chloroform
      solution spectrum shows a large red shift relative
      to the isooctane solution spectrum, in complete
      contradiction to our expectation.
      This observation immediately suggested the
      existence of an interaction between the amine and
      chloroform that is quite independent of any hydrogen
      bond complexing that these molecules may
      undergo. As may be seen in curves VI1 and VIII,
      the spectra of solutions of triethylamine in fluorotrichloromethane
      and in carbon tetrachloride show
      even larger red shifts from the isooctane solution
      spectrum than does that of the chloroform solution.
      Interaction here cannot involve hydrogen
      bonding by solvent. This spectral behavior of
      triethylamine in the halomethane solutions is that
      which would be expected if the amine forms a complex
      with the halomethanes of the type that have
      become known as “charge transfer complexes.”2~a.4
      (1) (a) D. P. Stevenson, G. M. Coppinger and J. W. Forbes, J. Am.
      Chcm. Soc.. 88, 4350 (1961); (h) D. P. Stevenson, ibid., to be submitted
      for publication.
      In the following paragraphs we will present spectroscopic
      evidence that triethylamine (B) does form
      a one to one molecular complex with each of the
      halomethanes (A) , chloroform, fluorotrichloromethane,
      carbon tetrachloride and bromotrichloromethane,
      of the type AB. We will also cite photochemical
      evidence that shows such, AB, complex
      formation is not limited to B = trialkylamine
      and that the electronic absorption spectra of these
      complexes are indeed very probably of the charge
      transfer type.
      The method employed to establish the existence
      of triethylamine-halomethane complexes and to
      determine the stoichiometry of the complexes was
      the observation of the absorption spectra of dilute
      isooctane solutions containing different ratios of
      amine to halomethane. In concentration units
      of moles/liter, the ratio B/A of the solutions
      measured were approximately 0.75/0.25; 0.50/0.50;
      0.25/0.75 and 0.25/0.25. Through the use of
      calibrated quartz inserts in the 1 cm. cells it was
      (2) H. A. Benesi and I. H. Hildebrand, ibid.. 71. 2703 (1949).
      (3) R. S. Mulliken, J . Chem. Phys., 19, 514 (1951).
      (4) The reviewer of this paper has suggested that the data to be
      presented below are better interpreted as indicating that amines and
      the halomethanes undergo “contact interaction ” of the type described
      by L. E. Orgel and R. S. Mulliken [ J .A m. Chcm. SOC.7, 9, 4839
      (1957)l to give rise to the new absorption hands as contact chargetransfer
      spectra, rather than as actual charge-transfer complexes with
      finite formation constants. The authors believe their erperimental
      data are adequate to establish the stoichiometry of the interaction, 1: 1,
      he it ordinary charge-transfer complex formntion or n case of contact
      interaction. However, they also feel that it requires over interpretation
      of the present data to reach a conclusion with respect to the question.
      is the formation constant of the“comp1ex” very small, but finite,
      or identically zero? The authors feel that the important aspect of the
      present paper is their evidence that the halomethanes constitute a
      hitherto unrecognized class of “acceptors” (albeit weak) for strong
      donors of the amine type. It should be noted in this connection that
      interaction of the type reported here is either non-existent or hardly
      observable in the case of the diethyl ether-carbon tetrachloride system
      (unpublished observations of one of the present nuthorn (DPS)).

    • #68957
      dipjyoti
      Participant

      the oxygen of alohols? (n to σ* transitions)???
      I don’t get it. Is it alcohol?

      Thank You.
      Dip Jyoti Chakraborty

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