make an mds analysis with an fst matrix

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    • #117278

      i’m new in this forum , and i hope that people will be able to help me
      i need to make an multi dimentional scaling analysis with spss from an fst distance matrix generated by arlequin and that deals with the distance with different population and the frequence of haplogroups , i have tried to do that with spss , but before doing this on my own data , i have used some publications as templates just to check if my analysis is good , the problem is that my output does not match the result i shoud have even if i have used the given stress value , so my question is what is the parameters that i shoud use to do my analysis , is there any specific values that i shoud put , all your advices are welcome , thank you very much for your help

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