Plz give some info regarding DDBJ???
January 27, 2011 at 12:11 pm #14428
I want to retrive some nucleotide sequences from it.
I dont know about DAD.
In results hit they display many links
i want all nucleotide sequences of my gene .
I dont know i have to taken it from DDBJ or DAD or any other links.
Plz give some information……….fast……… 🙁
January 27, 2011 at 1:09 pm #103330
by DDBJ you mean DNA Database of Japan, I guess. What do you mean by DAD?
If you’re talking about BLAST search, you get only links to the sequence page.
Why don’t you use PubMed insted? There you can have it in FASTA format,at least.
Plz give some explanation……….fast……… 🙁
January 28, 2011 at 10:27 am #103336
i want nucleotide sequences of gene trp5.
I think PubMed is used for literature search.
DAD & DDBJ are two different sequence libraries of DDBJ.
I dont know from where sequence should be taken.
-DAD has been produced by extracting alll translated sequences from the latest release of the INSDC.
– CON division entries are not included in current release of ARSA/DAD database.
i dont know about CON division.
January 28, 2011 at 9:05 pm #103338
January 29, 2011 at 8:58 pm #103347
PubMed has much more to offer than just a literature search. I think you should first have a look 😉
January 31, 2011 at 9:05 am #103357
I want sequences only from DDBJ.
means sequences which was submited through Japanies researchers.
January 31, 2011 at 4:24 pm #103358
Why so? Do you think that Japanese are the best? 😆
I think even into DDBJ can submit sequences non-Japanese researchers. You can always check, who submited the sequence.
February 1, 2011 at 8:01 am #103367
DDBJ contains most of the sequences from Japannese researchers not all. that i know.
I also know that DDBJ,EMBL & GenBank exchange their data by INSDC.
But i want to conferm this.
So i taken sequences from NCBI-GenBank,EMBL & now i want to take sequences from DDBJ.
But DDBJ gives only whole chromosome sequences & i want nucleotide sequences.
February 1, 2011 at 10:17 pm #103369
February 2, 2011 at 11:02 am #103371
You can see here that all sequences are of whole genome.
& i want only gene sequence.
February 2, 2011 at 7:12 pm #103375
Used that. Quick Search for trp5 in DDBJ (java script enabled in the database field) I have 212 hits (not all of trp5 at first glance with size starting at 110nt to indeed whole genomes. And the gene itself is the whole genome anyway, just look through the annotations.
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