Gapcoder is a funny with formats. Here is my workflow to get it to work: I open my alignment in ClusalX (free alignment software) and export it from there into a PIR format. The GapCoder software has no problems with .pir files but I have never gotten it to work properly with fasta. pir would be option 2 in when you import the file into gapcoder. Hope this helps.
Hi, I am also new to this forum. Recently, my supervisor suggested me to use gapcoder. I try to download this programme, but I failed.
I wonder if anyone could help me for sending this programme by email? Thanks in advance. My email address: firstname.lastname@example.org
i am new this forum. I am pleased to find this forum.
has anyone tried using the gap coder. this is small piece of software to score the gap in the DNA sequence alignment.
I tried several times but i am not getting the proper out put.
If i modify the the fasta file as per the instruction that is exported from the winclada, the gapcoder doesn’t read.
please suggest solution to this if any one has used.