Biology Forum Bioinformatics Consensus sequence in Bioedit via CLUSTALW

2 voices
1 reply
  • Author
    Posts
    • #16976
      vl80
      Participant

      Hello, I am aligning about 100 sequences in order to identify some primer targets for a long range PCR. I used the CLUSTALW interfaced via Bioedit. In order to identify the primers, I need a consesnsus sequence with degerate codes allowed. I can not find any option to get such a consensus sequence in the aligned areas.
      Please let me know if this is possible and if so the pathway of doing it.
      Thanks a lot

    • #112949
      JackBean
      Participant

      In the Menu you have Alignment/Create consensus sequence; that should do it.

You must be logged in to reply to this topic.

Members

  • Profile picture of Vix
    Active 8 hours, 52 minutes ago
  • Profile picture of Marty
    Active 19 hours, 5 minutes ago
  • Profile picture of Izzy
    Active 19 hours, 5 minutes ago
  • Profile picture of Andrea Kortig
    Active 1 day, 16 hours ago
  • Profile picture of diggavemo
    Active 1 day, 18 hours ago