Biology Forum Bioinformatics Consensus sequence in Bioedit via CLUSTALW

last updated by JackBean 10 years ago
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    • #16976

      Hello, I am aligning about 100 sequences in order to identify some primer targets for a long range PCR. I used the CLUSTALW interfaced via Bioedit. In order to identify the primers, I need a consesnsus sequence with degerate codes allowed. I can not find any option to get such a consensus sequence in the aligned areas.
      Please let me know if this is possible and if so the pathway of doing it.
      Thanks a lot

    • #112949

      In the Menu you have Alignment/Create consensus sequence; that should do it.

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