Consensus sequence in Bioedit via CLUSTALW - Biology Forum

last updated by

JackBean 12 years, 1 month ago

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- October 31, 2012 at 2:55 am #16976
  vl80
  Participant
  Hello, I am aligning about 100 sequences in order to identify some primer targets for a long range PCR. I used the CLUSTALW interfaced via Bioedit. In order to identify the primers, I need a consesnsus sequence with degerate codes allowed. I can not find any option to get such a consensus sequence in the aligned areas.
  Please let me know if this is possible and if so the pathway of doing it.
  Thanks a lot
- November 12, 2012 at 3:02 pm #112949
  JackBean
  Participant
  In the Menu you have Alignment/Create consensus sequence; that should do it.
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